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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_21F7C6BF7.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 571aa MW: 62074.1 Da PI: 6.1412 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.3 | 1.3e-32 | 278 | 334 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vk+se+prsYY+Ct+++Cpvkkkvers+ d++++ei+Y+++Hnh+ Traes_5DL_21F7C6BF7.2 278 EDGYNWRKYGQKQVKSSEHPRSYYKCTHPDCPVKKKVERSQ-DGQITEIVYKSSHNHP 334 8****************************************.***************7 PP | |||||||
2 | WRKY | 104.3 | 6.5e-33 | 490 | 548 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe Traes_5DL_21F7C6BF7.2 490 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHQGCSVRKHVERASHDLKSVITTYEGKHNHE 548 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-29 | 268 | 336 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.319 | 272 | 336 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-26 | 272 | 336 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.0E-36 | 277 | 335 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.0E-25 | 278 | 334 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.5E-37 | 475 | 550 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.97E-29 | 482 | 550 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.883 | 485 | 550 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.3E-38 | 490 | 549 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-25 | 491 | 548 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 571 aa Download sequence Send to blast |
MAGTGDRGSL MEDWMAMPPT PSPRTLMSSF LNEDFGSGQF SNFFGEHVSN KPHDQSEKRG 60 ELVDLREQVP AQSDTATATP QKDFSLQPNL FHANQKSNPQ GSLAERRASR AGFSIPKIDT 120 SRVGSSTVIR SPIAIPPGLS PTTLLESPVF LYNAMAQPSP TTGKLFVASE ANSTMPPDST 180 FSNDVFSFQP HSGPTSYSNV EKGYNVSHQN QLLSNIHQQG SSLQSSFTAV KDSADETIVK 240 PKTSDSVFSV NHSSEEQEDD EGDQNEEYSS ATNSNPAEDG YNWRKYGQKQ VKSSEHPRSY 300 YKCTHPDCPV KKKVERSQDG QITEIVYKSS HNHPLPPPNR RSGIPLSQIN DQQVHVLEKP 360 GSHTGLNTAS LWENGKSECI QDMQGVEGRP AAGPPVSAYG DTSIMESQDA ADVSSTLSNE 420 IDRATQGTIS LDCDVGEDET ESKRRKLDAL ASVTIPTATT TSSIDMVAAA SRAVREPRVV 480 VQTTSEVDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTHQG CSVRKHVERA SHDLKSVITT 540 YEGKHNHEVP AARNSGNAGS GSVSAPASAP Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-36 | 278 | 551 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-36 | 278 | 551 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK362158 | 0.0 | AK362158.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2002O24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010238285.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 | ||||
TrEMBL | A0A096UT27 | 0.0 | A0A096UT27_WHEAT; Uncharacterized protein | ||||
STRING | MLOC_58019.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2075 | 38 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 1e-117 | WRKY DNA-binding protein 2 |
Publications ? help Back to Top | |||
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